Ben Langmead(@BenLangmead) 's Twitter Profileg
Ben Langmead

@BenLangmead

Assoc. Prof. of Computer Science, Johns Hopkins University. Also @[email protected]

ID:296300255

linkhttp://www.langmead-lab.org calendar_today10-05-2011 14:41:35

2,4K Tweets

6,0K Followers

401 Following

Mohsen Zakeri(@MohsenZakeri1) 's Twitter Profile Photo

1/5 We (Nathaniel Brown, Omar Ahmed, Travis Gagie, and Ben Langmead) developed Movi, a cache-efficient full-text pangenome index. It's the fastest full-text index for pangenomes, particularly appropriate for adaptive sampling where time budget is important.

account_circle
Rajiv McCoy(@rajivmccoy) 's Twitter Profile Photo

Our latest study led by Dylan Taylor examines the sources of gene expression variation in a diverse human sample. We hope that these RNA-seq data from cell lines of 731 individuals in the 1000 Genomes Project will serve as a useful resource for the field. biorxiv.org/content/10.110…

Our latest study led by @tlrdln22 examines the sources of gene expression variation in a diverse human sample. We hope that these RNA-seq data from cell lines of 731 individuals in the 1000 Genomes Project will serve as a useful resource for the field. biorxiv.org/content/10.110…
account_circle
Ben Langmead(@BenLangmead) 's Twitter Profile Photo

Oct 2023 Kraken 2 indexes available. New this round: archives & website have `library_report.tsv` files listing FASTA ids & URLs for database sequences; makes it easy to check if specific sequences are there. 🙏to Amazon Web Services public data for the space! benlangmead.github.io/aws-indexes/k2

Oct 2023 Kraken 2 indexes available. New this round: archives & website have `library_report.tsv` files listing FASTA ids & URLs for database sequences; makes it easy to check if specific sequences are there. 🙏to @awscloud public data for the space! benlangmead.github.io/aws-indexes/k2
account_circle
Zamin Iqbal(@ZaminIqbal) 's Twitter Profile Photo

Recruiting PhD students for Oct 24 start at University of Bath. Fully funded for UK students only. If interested in developing data structures/algorithms for bacterial genomics, or exploring plasmid epidemiology, or ML/AI on bacterial/phage geno/pheno data, give me a call 1/n

account_circle
Ben Langmead(@BenLangmead) 's Twitter Profile Photo

This is an all-area tenure-track faculty search in JHU Computer Science -- 'substantial growth across all research areas' -- definitely including Comp Biology & Genomics. Please apply & spread the word, friends. cra.org/job/johns-hopk…

account_circle
Ben Langmead(@BenLangmead) 's Twitter Profile Photo

To help me celebrate the O's division clinch and new 30-year lease in Baltimore, you must now look upon my signed Ben McDonald rookie cards

To help me celebrate the O's division clinch and new 30-year lease in Baltimore, you must now look upon my signed Ben McDonald rookie cards
account_circle
Mao-Jan Lin(@MaoJanLin) 's Twitter Profile Photo

Recent alignment methods aim to reduce reference bias, where reads with non-ref alleles fail to align correctly. However, there's a lack of methods for analyzing reference bias. Here we present biastools, which measures and categorizes reference bias. 1/
biorxiv.org/content/10.110…

account_circle
Li Song(@mourisl) 's Twitter Profile Photo

The Quantitative Biomedical Science grad program at Dartmouth is open for applications: geiselmed.dartmouth.edu/qbs/admissions…. If you are interested in developing cool bioinfo methods or conducting impactful translational research for your MS/PhD degree, this is a great program to consider.

account_circle
Ziang Xiao(@ZiangXiao) 's Twitter Profile Photo

I am looking for 1-2 Ph.D. students starting FA24 JHU Computer Science. If you are interested in HCI, esp. language technology, and applying for grad school, I wrote a note to share my thoughts on student advising and future research landscape.

link: tinyurl.com/2r5cd86k

account_circle
Jane Carlton(@Genome_Jane) 's Twitter Profile Photo

I'm thrilled to announce my new position as Director of the Johns Hopkins Malaria Research Institute in the Bloomberg School of Public Health, Baltimore. Many thanks to Director emeritus Peter Agre whose stellar leadership advanced malaria research Johns Hopkins Malaria Research Institute ...

account_circle
Heng Li(@lh3lh3) 's Twitter Profile Photo

Richard Durbin and I have been working on a review titled 'Genome assembly in the telomere-to-telomere era'. We have put the preprint at arxiv.org/abs/2308.07877. Let us know if you have comments or suggestions. We would really appreciate!

@richard_durbin and I have been working on a review titled 'Genome assembly in the telomere-to-telomere era'. We have put the preprint at arxiv.org/abs/2308.07877. Let us know if you have comments or suggestions. We would really appreciate!
account_circle