RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO biorxiv.org/content/10.110…

Pan-cancer proteogenomics characterization of tumor immunity: Cell cell.com/cell/fulltext/…

Nice work illustrating the power of the CPTAC pan-cancer proteogenomic data.

Very proud to be part of this work! Thank all the team members for all the hard work Francesca Petralia Michele Ceccarelli AlexanderLazarMDPhD AviMaayan Cantley Lab Mount Sinai Genetics Hope the findings will help to advance immune therapy for cancer patients!

If you missed the recent #DataSciSeminar discussing tools from Ma'ayan Lab to help locate gene sets for your #CancerResearch , tune in on-demand: datascience.cancer.gov/news-events/ev… AviMaayan

Having trouble finding gene sets to help in your #CancerResearch ? Sign up for National Cancer Institute’s #DataSciSeminar and learn about two new tools from Ma'ayan Lab that may make your task a little easier. datascience.cancer.gov/news-events/ev… AviMaayan

🧬🔍 Dive into the Diabetes & Data Exploration with D2H2! The Diabetes and Data and Hypothesis Hub is a transformative platform unlocking the potential of omics datasets in diabetes research. doi.org/10.1093/bioadv… AviMaayan Icahn School of Medicine at Mount Sinai

Hello! Great way to surface and FAIRify supplement data and information from publications.

Say hello to #Rummagene available from: rummagene.com. To create it @maayanlab scanned supp. materials of 5.4M #PMC articles to find 642K human gene sets. Sets are served for enrichment, free text, and table title search. Paper is now on biorxiv biorxiv.org/cgi/content/sh…

Summer Research Training Program in Biomedical Big #DataScience in the Ma'ayan Lab Icahn School of Medicine at Mount Sinai
ACCEPTING APPLICATIONS FOR SUMMER SESSION 2024 | Application deadline Feb 1 labs.icahn.mssm.edu/maayanlab/summ…

This groundbreaking paper: nature.com/articles/s4158… by Marson Lab cited Ma'ayan Lab #ARCHS4 . Function predictions for #BTN3A1 with #PrismExp are spot on maayanlab.cloud/prismexp/g/BTN… with suggested role for the mechanism also in autoimmune diseases. Also, #GATA3 is predicted as a key TF.

Need #bioinformatics tools, algorithms, and software to collect, process, analyze, and visualize #CancerResearch data? Check out the revamped #NCIITCR tool catalog to access tools, code repositories, and introductory videos, all free for academic use: itcr.cancer.gov/informatics-to…

Thanks to Chi Hoang and AviMaayan, gget enrichr finally allows the specification of a background gene list! 🧬🧬🧬

P.S. Check out our renewed website!

¡Ahora también en español!

pachterlab.github.io/gget/

Researchers tapped #ArtificialIntelligence (AI) methods to shed light on associations between existing medications and their potential to induce specific birth abnormalities. Dr. AviMaayan discusses ReproTox-KG and its potential impacts: mshs.co/44cw4Vv

Join the Ma'ayan Lab Virtual Symposium 8/10 @ 10 AM ET where our trainees in the Summer Undergraduate Research Training Program in Biomedical Big #DataScience will present their research projects. Register:
mssm.zoom.us/webinar/regist… #STEM #Bioinformatics #SystemsBiology #DataMining

💡 NEW RESEARCH Communications Medicine - Evangelista et al. construct ReproTox-KG, a #toxicology knowledge graph for exploring the link between drugs, genes & structural birth defects | Ma'ayan Lab AviMaayan Common Fund Data Ecosystem
nature.com/articles/s4385…

Data scientists at Icahn School of Medicine at Mount Sinai and colleagues have created an #ArtificialIntelligence model that may more accurately predict which existing #medicines , not currently classified as harmful, may, in fact, lead to congenital disabilities: mshs.co/3rxxJr0

Last month we welcomed the 2023 cohort of 12 talented undergraduates into our lab for 10-weeks as part of our Summer Research Training Program in Biomedical Big #DataScience labs.icahn.mssm.edu/maayanlab/summ…

Our cover image was selected for the June issue of Nature Cardiovascular Research ! This is exciting! This was inspired by our #systemsimmunology #drugreporpusing for #immunotherapies paper: rdcu.be/dd4Ne NYU Langone Health NYU CVRC Letizia Amadori Icahn School of Medicine at Mount Sinai @chiaragiannare1 NYU Grossman School of Medicine

Using #systemsimmunology -based #drugrepurposing GiannarelliLab identifies #antiinflammatory and anti-atherosclerotic functions for #saracatinib .nature.com/articles/s4416…
NYU Grossman School of Medicine
Icahn School of Medicine at Mount Sinai
NYU CVRC
Letizia Amadori
#CardioTwitter #atheroclerosis
👉rdcu.be/depPi

#archs4 The ARCHS4py package now supports running the ARCHS4 alignment pipeline locally. You can now extract data, search metadata, or align your own data to make it compatible with existing ARCHS4 gene counts. github.com/MaayanLab/arch…