scPanel: A tool for automatic identification of sparse gene panels for generalizable patient classification using scRNA-seq datasets biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Discovery of dynamic changes in 3D chromatin architecture through polymer physics model biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

scRCA: a Siamese network-based pipeline for the annotation of cell types using imperfect single-cell RNA-seq reference data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Spatial motifs reveal patterns in cellular architecture of complex tissues biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Profiling the intestinal microbiota, plasma bile acids and inflammation markers reveals novel associations in Crohn's disease and ... biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Comprehensive evaluation and prediction of editing outcomes for near-PAMless adenine and cytosine base editors biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

On use of tertiary structure characters in hidden Markov models for protein fold prediction biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Towards improving full-length ribosome density prediction by bridging sequence and graph-based representations biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Machine Learned Classification of Ligand Intrinsic Activities at Human μ-Opioid Receptor biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Flynotyper 2.0: A tool for rapid quantitative assessment of Drosophila eye phenotypes biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Interpreting single-cell and spatial omics data using deep networks training dynamics biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

ARTEMIS - a method for topology-independent superposition of RNA 3D structures and structure-based sequence alignment biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

BiGCN: Leveraging Cell and Gene Similarities for Single-cell Transcriptome Imputation with Bi-Graph Convolutional Networks biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

PAMPHLET: A Robust Toolkit for Precise PAM Prediction and Unveiling PAM Consistency in Highly Co-occurrence CRISPR-Cas Systems biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

vcfgl: A flexible genotype likelihood simulator for VCF/BCF files biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

GCI: a continuity inspector for complete genome assembly biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

CELEBRIMBOR: Pangenomes from metagenomes biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

TopDIA: A Software Tool for Top-Down Data-Independent Acquisition Proteomics biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Role of Mutual Information Profile Shifts in Assessing the Pathogenicity of Mutations on Protein Functions: The case of Pyrin Mutations biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Leveraging cross-source heterogeneity to improve the performance of bulk gene expression deconvolution biorxiv.org/cgi/content/sh… #biorxiv_bioinfo